I finished the Junktown Dungeon except for 2 rooms. Went to use a teleporter - Ran into the issue with a teleporter and to get out of it I Saved and Exited.
THE BUG is when I restarted the game and started oustide the dungeon and it gave me the options to continue or reset the dungeon. I chose to continue and when I went inside the map and all creatures and puzzles were reset! So I have to find all 3 clues again and I believe I lost the weapon that I put in that stone box to upgrade since the map has been reset.